Hello, it's good to share informations and/or problems with that interresting subject that is working in 3D ( I also have problems and questions without answers ).
What I mean when saying working directly in 3 dimensions is that with old release you could only work in x, y confomably to your UCS.
Now you can draw a line in X following the red direction, Y following the green direction and also in Z following the blue direction.
This is good but can lead you not working in the right direction ( and worse if you don't have F8 on ).
There is an option to "Ignore snapping objects negative Z USC dyn" in the "OPTION" menu / Drawing that may allow you working in 3D with a 2D viewpoint ( I havn't try ).
What happen to me is having my UCS changing automaticaly ( not my will, not my choise and making troubles ) when approching a 3D object.
It looks like it have to see with the "dynamic UCS" but I havn't done searches on this subject.
May be your problems have things to see with this.
3D is so interresting , so difficult and problematic is you start your dwg with wrong first steps that I switch to old and slow drawing methods not to have to redraw everything in the middle of the work.
I have only AutoCAD 2008 and so my informations can be outdated ( I think that the "old and slow methods" are still OK on recent releases and may be better before you validate your drawings ).